atm there are a lot of issues with the game update itself. Offcourse this will affect mods but reading up on the funcom forums it also has happend with non modded offcial servers. Nitrado cant do alot about this. lets just keep our fingers crossed for a better patch and then you might want to roll back a previous backup. not sure if it wil work even then.
Keep a eye on the funcom forums for more info.